FastQC-viz: Create all plots

First, creates the directory for all files (/images/plots) and run the plot function for all the plots that create .png files.

Plot functions that not create .png files:

• plot_basic_statistics()

• plot_overrepresented_sequences()

• plot_status_summary()

Usage

create_all_plots(fastqc_data, output_dir)

Arguments

fastqc_data

output from fastqc parser

output_dir

output directory

Examples

fastqc_data <- parse_fastqc(system.file("extdata", "SRR622457_2_fastqc.txt", package = "fastqcviz"))
if (FALSE) { # \dontrun{
create_all_plots(fastqc_data, output_dir = "fastqcviz")
} # }