Package index • fastqcviz

FastQC parsing

Functions to parse the original FastQC.

parse_fastqc(): FastQC-viz: FastQC parser

separate_modules(): FastQC Parse: Separate Modules

module_content_to_tibble(): FastQC-viz: Module content to tibble

Create HTML file

Functions to create the HTML file.

create_fastqcviz_report(): FastQC-viz: Create FastQC-viz report

create_all_plots(): FastQC-viz: Create all plots

Create HTML elements

Functions to create the HTML elements.

create_header(): FastQC-viz: Create Header

plot_basic_statistics(): FastQC-viz: Basic statistics

plot_overrepresented_sequences(): FastQC-viz: Plot Overrepresented Sequences

plot_status_summary(): FastQC-viz: Status Summary

status_to_pill(): FastQC-viz: Status to Pill

Plot functions

Functions to create the plots for the FastQC report.

plot_adapter_content(): FastQC-viz: Plot adapter content

plot_per_base_n_content(): FastQC-viz: Plot Per base N content

plot_per_base_sequence_quality(): FastQC-viz: Plot Per base sequence qualit

plot_per_sequence_gc_content(): FastQC-viz: Plot Per sequence GC content

plot_per_sequence_quality_scores(): FastQC-viz: Plot Per Sequence Quality Scores

plot_sequence_duplication_levels(): FastQC-viz: Plot Sequence duplication levels

plot_sequence_length_distribution(): FastQC-viz: Plot Sequence Length Distribution

Styling

Functions to style the plots.

theme_set_fastqcviz(): FastQC-viz: Theme set fastqcviz

get_color_palette(): FastQC-viz: Get color palette

Other functions

format_large_numbers(): Format Numbers with Metric Suffixes (K, M, B, T)

process_gc_data(): FastQC-viz: Process GC Content Data

add_all_plots_list(): FastQC-viz: Add all plots to the replacement list

Decrepated functions

status_to_pill(): FastQC-viz: Status to Pill