FastQC-viz: Plot Overrepresented Sequences — plot_overrepresented

Create HTML elements for "Overrepresented Sequences". Note: not actually a plot.

Usage

plot_overrepresented_sequences(fastqc_data)

Arguments

fastqc_data: parse_fastqc() output

Value

character, HTML elements for "Overrepresented Sequences" box.

Examples

fastqc_data <- parse_fastqc(system.file("extdata", "SRR622457_2_fastqc.txt", package = "fastqcviz"))
plot_overrepresented_sequences(fastqc_data)
#> <table>
#>  <thead>
#>   <tr>
#>    <th style="text-align:left;"> Sequence </th>
#>    <th style="text-align:left;"> N </th>
#>    <th style="text-align:left;"> % </th>
#>    <th style="text-align:left;"> Possible Source </th>
#>   </tr>
#>  </thead>
#> <tbody>
#>   <tr>
#>    <td style="text-align:left;"> NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN </td>
#>    <td style="text-align:left;"> 15.3<span class="unit">K</span> </td>
#>    <td style="text-align:left;"> 0.6 </td>
#>    <td style="text-align:left;"> No Hit </td>
#>   </tr>
#> </tbody>
#> </table>